Molecular features crucial to the activity of pyrimidine benzamide-based thrombopoietin receptor agonists

Bioorg Med Chem Lett. 2008 May 1;18(9):3000-6. doi: 10.1016/j.bmcl.2008.03.052. Epub 2008 Mar 20.

Abstract

The identification of small molecule modulators of biological processes mediated via protein-protein interactions has generally proved to be a challenging endeavor. In the case of the thrombopoietin receptor (TPOr), however, a number of small molecule types have been reported to display biological activity similar to that of the agonist protein TPO. Through a detailed analysis of structure-activity relationships, X-ray crystal structures, NMR coupling constants, nuclear Overhauser effects, and computational data, we have determined the agonism-inducing conformation of one series of small molecule TPOr agonists. The relationship of this agonism-inducing conformation to that of other series of TPO receptor agonists is discussed.

MeSH terms

  • Animals
  • Benzamides / chemistry
  • Benzamides / pharmacology*
  • Cell Line
  • Computer Simulation
  • Crystallography, X-Ray
  • Magnetic Resonance Spectroscopy
  • Protein Binding
  • Protein Conformation
  • Pyrimidines / chemistry
  • Pyrimidines / pharmacology*
  • Receptors, Thrombopoietin / agonists*
  • Receptors, Thrombopoietin / chemistry
  • Structure-Activity Relationship
  • Thrombopoietin* / chemistry
  • Thrombopoietin* / metabolism

Substances

  • Benzamides
  • Pyrimidines
  • Receptors, Thrombopoietin
  • benzamide
  • Thrombopoietin
  • pyrimidine